FastQCFastQC Report
Sat 22 Apr 2017
SRR1976948_1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR1976948_1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 1000000
Filtered Sequences 0
Sequence length 251
%GC 44

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 1523400 3.6559155 6.1976423 240-247
TTTTT 1245010 3.1731012 4.151293 8