Instructors: Harriet Alexander, Phillip Brooks, and C. Titus Brown
TAs: Luiz Irber, Shannon Joslin, Taylor Reiter
These are the online materials for a metagenomics workshop hosted by Marilou Sison-Mangus at UC Santa Cruz on April 22nd and April 23rd, 2017.
Logging into the cloud (XSEDE Jetstream)
Annotating your short-read data set with Prokka
Quantifying abundance across samples with Salmon
A brief discussion of workflows & repeatability
Resources:
The github repository for this workshop is public at https://github.com/ngs-docs/2017-ucsc-metagenomics