2017-ucsc-metagenomics
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Site
2017 Metagenomics workshop at UC Santa Cruz
Welcome!
Booting a Jetstream Computer Instance for your use!
Short read quality and trimming
Run the MEGAHIT assembler
Annotation with Prokka
Mapping and Binning a Metagenome Assembly
Gene Abundance Estimation with Salmon
Mapping
Slicing and dicing with k-mers
Using and Installing Circos
Workflow and repeatability discussion
Data
Building this site on your own
2017 / April / Metagenomics
Day 2 - installation instructions
K-mer Spectral Error Trimming
Page
Index